1. Talk to Zeyar and find the problem with his code
2. Continue to develop the rest of the matrix comparison program; make it automatically load the files in the matrix directory, read the matrix and compare.
3. When clustering is done, analysize the clusters with methods that are similar to emerging patterns. Identify the substructures (domains) that are unique in the cluster under analysis. If not found, try to use the most often occured substructure in a domain. This method has to be compared with the BLAST-Homology methods and show that my method is superior in terms of accuracy.
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